PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004511855.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family LBD
Protein Properties Length: 234aa    MW: 25590 Da    PI: 8.0864
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004511855.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26096.43.1e-302102196
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C+++C+l+p++     p++q +++ +v+k+FG++ ++++++++p+ +r+++++sl+ eA+ r+ +Pv+Gavg++++++++++q+
  XP_004511855.1   2 SCNGCRVLRKGCSESCILRPCLqwidtPEAQGHATVFVAKFFGRADLMSFISNVPQPQRPALFQSLLLEACGRTVNPVNGAVGLLWTGNWHVCQA 96 
                     6********************************************************************************************** PP

          DUF260  91 kaelal 96 
                     ++e++l
  XP_004511855.1  97 AVETVL 102
                     *99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.8061107IPR004883Lateral organ boundaries, LOB
PfamPF031952.3E-262101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSESCILR PCLQWIDTPE AQGHATVFVA KFFGRADLMS FISNVPQPQR  60
PALFQSLLLE ACGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGTPRPI PEFLGLDALT  120
STADDASEGE VTCNDARKVQ DPNQNSRFVS SRSNKVASGG KRKRYDFATT DLNLRLTPCF  180
LQNALTSSCR REIRRPGTPS MNSEESVTTM TSLESGIGDQ YVNDGDRKVL NLFV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1430321e-125BT143032.1 Medicago truncatula clone JCVI-FLMt-1O21 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004511855.11e-174PREDICTED: LOB domain-containing protein 37
SwissprotQ9SN231e-81LBD38_ARATH; LOB domain-containing protein 38
TrEMBLI1J9D31e-139I1J9D3_SOYBN; Uncharacterized protein
STRINGGLYMA01G40010.11e-139(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.17e-83LOB domain-containing protein 38